DreEX6032760 @ danRer10
Exon Skipping
Gene
ENSDARG00000016835 | tcirg1a
Description
T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3a [Source:ZFIN;Acc:ZDB-GENE-090311-31]
Coordinates
chr1:44192528-44193540:-
Coord C1 exon
chr1:44193445-44193540
Coord A exon
chr1:44193296-44193357
Coord C2 exon
chr1:44192528-44192654
Length
62 bp
Sequences
Splice sites
3' ss Seq
ATCTCATAATGTCCTTCAAGGTT
3' ss Score
6.29
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTGTCCAGGAACAGGGACAGTCTTCGTAACCAGCTGACCCAGCTCAGCCAGTACAGAGGGGTCCTGAAGCAGAGCATTTTACTACCAACCTCACAG
Seq A exon
GTTCCACCTCTGACTCTTGAGACATCAGCATTACTGGACAGCAGGCAAGATATGCGTTTGAG
Seq C2 exon
TTTTGTTGCTGGTGTGGTCCATCCGTGGAAGGTGCCAGCGTTTGAGAGGCTGCTGTGGCGGGCCTGTCGTGGATACATCATTGTAGACTTCTGGGAGATGGAGGAAAGGCTGGAGGAGCCAGACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016835-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(3.9=100)
A:
PF0149614=V_ATPase_I=FE(2.5=100)
C2:
PF0149614=V_ATPase_I=FE(5.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCCTGAAGCAGAGCATTT
R:
GCCTTTCCTCCATCTCCCAGA
Band lengths:
148-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]