DreEX0015959 @ danRer10
Exon Skipping
Gene
ENSDARG00000035538 | atp6v0a2a
Description
ATPase, H+ transporting, lysosomal V0 subunit a2a [Source:ZFIN;Acc:ZDB-GENE-091113-4]
Coordinates
chr10:8055664-8063346:-
Coord C1 exon
chr10:8063209-8063346
Coord A exon
chr10:8060842-8060939
Coord C2 exon
chr10:8055664-8055790
Length
98 bp
Sequences
Splice sites
3' ss Seq
CATGTGTGTGTCTTGTTTAGCAT
3' ss Score
9.49
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GAGCAGCTGCAGAGGCTGGAGGTGGAGCTCAGTGAAGTAGCCAAGAATAAAGAGAAGCTGCAGAGGAACCTGCTGGAGCTGATGGAGTACACACACATGCTGAGGATCACACGCTCATTCGTGCACAGCCGCTCCAGG
Seq A exon
CATGAAGCCTTGGGCCCTCAGTATGAAGAGTTTCCGTCTTTGGAGACTGAATCGGTGACAGGCTGCACCAGTATGCAGAGACTTGGTGCCAAACTCGG
Seq C2 exon
GTTTGTCTCAGGATTGATCCAGCGGGTGAAGGTGGAGGCGTTTGAACGCATGCTGTGGCGAGTCTGTAAAGGTTACACCATTCTCAGCTACGCAGAAGTGGACGAGAGCCTGGCTGATCTCGACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035538-'5-8,'5-7,6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(5.6=100)
A:
PF0149614=V_ATPase_I=FE(4.0=100)
C2:
PF0149614=V_ATPase_I=FE(5.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGTGGAGCTCAGTGAAG
R:
TTCAAACGCCTCCACCTTCAC
Band lengths:
168-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]