MmuEX0006891 @ mm10
Exon Skipping
Gene
ENSMUSG00000038023 | Atp6v0a2
Description
ATPase, H+ transporting, lysosomal V0 subunit A2 [Source:MGI Symbol;Acc:MGI:104855]
Coordinates
chr5:124637486-124641596:+
Coord C1 exon
chr5:124637486-124637623
Coord A exon
chr5:124639195-124639283
Coord C2 exon
chr5:124641470-124641596
Length
89 bp
Sequences
Splice sites
3' ss Seq
CTGCTTCTGTGTCTTTTCAGTTT
3' ss Score
11.79
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
GAACAGCTGCAGAAGCTGGAGGTGGAGCTCAGAGAAGTCACCAAGAACAAGGAGAAGCTGAGGAAGAACCTGTTGGAGCTGGTGGAGTACACCCACATGCTGAGGGTCACGAAGACCTTCCTCAAGCGGAATGTGGAG
Seq A exon
TTTGAGCCCACGTATGAAGAGTTTCCCGCCTTAGAGAACGACTCTCTGTTGGACTACAGCTGCATGCAGCGGCTGGGCGCCAAGCTGGG
Seq C2 exon
ATTCGTTTCTGGCCTGATTCAGCAAGGCAGAGTTGAAGCATTTGAAAGGATGCTGTGGCGGGCCTGCAAAGGGTACACCATTGTGACCTATGCAGAGCTGGACGAGTGCCTGGAGGACCCTGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038023-'10-12,'10-10,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(32.6=100)
A:
PF0149614=V_ATPase_I=FE(19.0=100)
C2:
PF0149614=V_ATPase_I=FE(5.1=100)
Main Skipping Isoform:
ENSMUST00000037865fB6398
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGGAGCTGGTGGAGTACA
R:
TCCAGCTCTGCATAGGTCACA
Band lengths:
170-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types