RnoEX0013266 @ rn6
Exon Skipping
Gene
ENSRNOG00000052704 | Atp6v0a2
Description
ATPase H+ transporting V0 subunit a2 [Source:RGD Symbol;Acc:621006]
Coordinates
chr12:37386579-37390235:-
Coord C1 exon
chr12:37390098-37390235
Coord A exon
chr12:37388668-37388756
Coord C2 exon
chr12:37386579-37386705
Length
89 bp
Sequences
Splice sites
3' ss Seq
CTGCTTCTGTGTCTTTCCAGTTT
3' ss Score
10.96
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
GAGCAGCTGCAGAAGCTCGAGGTGGAGCTCAGAGAAGTCACCAAGAACAAGGAGAAGCTGAGGAAGAACCTGCTGGAGCTGGTGGAGTATACCCACATGCTGAGGGTCACCAAGACCTTCCTTAAACGGAACGTGGAG
Seq A exon
TTTGAGCCAACTTACGAAGAGTTCCCCGCCTTAGAGAGCGACTCTCTGTTGGACTACAGCTGCATGCAGCGGCTGGGCGCCAAGCTGGG
Seq C2 exon
ATTCGTTTCTGGCCTGATTCAGCAAGGCAAAGTGGAAGCATTTGAAAGAATGCTGTGGCGGGCCTGCAAAGGGTACACCATTGTGACCTATGCAGAGCTGGACGAGGCCCTGGAAGACCCTGAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052704-'34-33,'34-32,35-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(13.4=100)
A:
PF0149614=V_ATPase_I=FE(3.5=100)
C2:
PF0149614=V_ATPase_I=FE(12.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCTGGTGGAGTATACCC
R:
TCCAGCTCTGCATAGGTCACA
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]