HsaEX0006968 @ hg19
Exon Skipping
Gene
ENSG00000185344 | ATP6V0A2
Description
ATPase, H+ transporting, lysosomal V0 subunit a2 [Source:HGNC Symbol;Acc:18481]
Coordinates
chr12:124209201-124212456:+
Coord C1 exon
chr12:124209201-124209338
Coord A exon
chr12:124210744-124210832
Coord C2 exon
chr12:124212330-124212456
Length
89 bp
Sequences
Splice sites
3' ss Seq
TTTCATATGTTTATTTCTAGTTT
3' ss Score
7.68
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
GAGCAGTTGCAGAAGCTCGAGGTTGAACTGAGAGAAGTCACTAAGAACAAGGAGAAACTGAGGAAAAACTTGCTGGAACTGATAGAGTACACTCACATGCTGAGAGTGACAAAGACCTTTGTGAAACGCAATGTTGAG
Seq A exon
TTTGAACCCACTTATGAAGAATTCCCTTCCTTAGAGAGTGATTCTTTGTTGGATTACAGCTGTATGCAGAGGCTGGGAGCAAAACTGGG
Seq C2 exon
ATTTGTGTCTGGCCTAATTAACCAAGGAAAAGTGGAAGCATTTGAAAAAATGTTGTGGAGAGTCTGCAAAGGGTACACCATCGTGTCCTATGCAGAACTGGATGAATCCCTTGAAGACCCTGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185344_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(5.5=100)
A:
PF0149614=V_ATPase_I=FE(3.5=100)
C2:
PF0149614=V_ATPase_I=FE(12.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGCAGAAGCTCGAGGTTG
R:
TGCTTCCACTTTTCCTTGGTT
Band lengths:
174-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)