GgaEX1010040 @ galGal3
Exon Skipping
Gene
ENSGALG00000003194 | ATP6V0A2
Description
NA
Coordinates
chr15:4966248-4967623:-
Coord C1 exon
chr15:4967486-4967623
Coord A exon
chr15:4967094-4967194
Coord C2 exon
chr15:4966248-4966374
Length
101 bp
Sequences
Splice sites
3' ss Seq
TCTTGCTTTTTCTTTTCTAGTAT
3' ss Score
10.84
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
GAACAGTTGCAGAAGCTGGAGACAGAACTGAGGGAAGTAAATAAAAACAAAGAGAAGCTGAGGAAAAACTTGATTGAACTCACGGAGTACACGTGCATGTTGGATGTCACACAAACGTTTGTCAGGAGAGCAGCTGAG
Seq A exon
TATGAGTCCCACTTGCATATAAATTATGAAGAATTTCCATCAGTGGAAAATGAGCCATTTGCAGATTACAACTGTATGCACAGACTGGGTGCCAAGCTGGG
Seq C2 exon
CTTTATATCTGGGTTGGTTCACCGAGCAAAAGTTGAGGCATTTGAAAAAATGCTGTGGAGAGCCTGTAAAGGATACACTATTCTGACATATGCGGAGCTGGATGAATGTCTGGAAGATCCAGATACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003194-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(5.6=100),PF102244=DUF2205=PD(69.8=95.7)
A:
PF0149614=V_ATPase_I=FE(4.1=100)
C2:
PF0149614=V_ATPase_I=FE(5.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTTGCAGAAGCTGGAGAC
R:
GACATTCATCCAGCTCCGCAT
Band lengths:
246-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]