DreEX0015966 @ danRer10
Exon Skipping
Gene
ENSDARG00000035565 | atp6v0a2b
Description
ATPase, H+ transporting, lysosomal V0 subunit a2b [Source:ZFIN;Acc:ZDB-GENE-060526-4]
Coordinates
chr5:24042528-24044548:+
Coord C1 exon
chr5:24042528-24042665
Coord A exon
chr5:24043802-24043899
Coord C2 exon
chr5:24044422-24044548
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTTTGCTTGTGTGGGAGCAGAGA
3' ss Score
3
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
GAGCAGCTTCAGAGACTGGAACTCGAACTGGGTGAAGTCACCAGGAATAAGGAGAAGCTCCAGAAAAACCTTCTAGAGCTGACTGAATACACACACATGCTCCGCATCACTCGCAACTTTGTGCATCGCGGCACAGAG
Seq A exon
AGAGAGTCAACACAGGGCCAGTATGAAGAATTCCCCTTTCTAGAGAAAGAACCCATGATGGACTACACCAGCATGCAGAGGCTTGGAGCCAAGCTTGG
Seq C2 exon
GTTCATTTCTGGCCTCATCCAGAGTGTGAAAATCGAGGCATTTGAGCGAATGCTCTGGAGAGTATGTAAGGGCTACACTATCCTCAGCTACTCTGAGGTAGATGAGCTTCTGGATGACCCTGATTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035565-'3-8,'3-5,4-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(5.5=100),PF104734=CENP-F_leu_zip=FE(45.9=100)
A:
PF0149614=V_ATPase_I=FE(3.9=100),PF104734=CENP-F_leu_zip=PD(9.2=27.3)
C2:
PF0149614=V_ATPase_I=FE(5.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AATACACACACATGCTCCGCA
R:
TCAGGGTCATCCAGAAGCTCA
Band lengths:
176-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]