RnoEX6064248 @ rn6
Exon Skipping
Gene
ENSRNOG00000052704 | Atp6v0a2
Description
ATPase H+ transporting V0 subunit a2 [Source:RGD Symbol;Acc:621006]
Coordinates
chr12:37388668-37391668:-
Coord C1 exon
chr12:37391523-37391668
Coord A exon
chr12:37390098-37390235
Coord C2 exon
chr12:37388668-37388756
Length
138 bp
Sequences
Splice sites
3' ss Seq
CCGGCAGCTGTGCATTGTAGGAG
3' ss Score
2.89
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
TGTACCTGGTGCAGGAAATCACCAGAGCTGATATTCCCCTGCCTGAGGGAGAGGCCAGTCCTCCCGCACCACCTGTTAAACATGTTCTAGAAATGCAGGTAACTCGCTCGTCAAGACGCTGTCAGCAAAAGTTCCAGGGCTACCAG
Seq A exon
GAGCAGCTGCAGAAGCTCGAGGTGGAGCTCAGAGAAGTCACCAAGAACAAGGAGAAGCTGAGGAAGAACCTGCTGGAGCTGGTGGAGTATACCCACATGCTGAGGGTCACCAAGACCTTCCTTAAACGGAACGTGGAG
Seq C2 exon
TTTGAGCCAACTTACGAAGAGTTCCCCGCCTTAGAGAGCGACTCTCTGTTGGACTACAGCTGCATGCAGCGGCTGGGCGCCAAGCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052704-'33-32,'33-30,34-32=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.356 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(14.3=100)
A:
PF0149614=V_ATPase_I=FE(13.4=100)
C2:
PF0149614=V_ATPase_I=FE(3.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGCAGGAAATCACCAG
R:
CTGCATGCAGCTGTAGTCCAA
Band lengths:
210-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]