DreEX0015965 @ danRer10
Exon Skipping
Gene
ENSDARG00000035565 | atp6v0a2b
Description
ATPase, H+ transporting, lysosomal V0 subunit a2b [Source:ZFIN;Acc:ZDB-GENE-060526-4]
Coordinates
chr5:24041589-24043899:+
Coord C1 exon
chr5:24041589-24041686
Coord A exon
chr5:24042528-24042665
Coord C2 exon
chr5:24043802-24043899
Length
138 bp
Sequences
Splice sites
3' ss Seq
AGCATGTATGTTTTGTATAGGAG
3' ss Score
4.32
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GATATCTTCTGAGGGAAATTAAAAAAGAAGACATCCCACTGCCAGAAGGGGAGGTGAACCCTGCTGCACCATTACCCAAACATGTGATGGTCATAATG
Seq A exon
GAGCAGCTTCAGAGACTGGAACTCGAACTGGGTGAAGTCACCAGGAATAAGGAGAAGCTCCAGAAAAACCTTCTAGAGCTGACTGAATACACACACATGCTCCGCATCACTCGCAACTTTGTGCATCGCGGCACAGAG
Seq C2 exon
AGAGAGTCAACACAGGGCCAGTATGAAGAATTCCCCTTTCTAGAGAAAGAACCCATGATGGACTACACCAGCATGCAGAGGCTTGGAGCCAAGCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035565-'2-5,'2-3,3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(3.9=100),PF104734=CENP-F_leu_zip=FE(32.7=100)
A:
PF0149614=V_ATPase_I=FE(5.5=100),PF104734=CENP-F_leu_zip=FE(45.9=100)
C2:
PF0149614=V_ATPase_I=FE(3.9=100),PF104734=CENP-F_leu_zip=PD(9.2=27.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGACATCCCACTGCCAG
R:
CTCCAAGCCTCTGCATGCTG
Band lengths:
162-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]