MmuEX6021032 @ mm10
Exon Skipping
Gene
ENSMUSG00000038023 | Atp6v0a2
Description
ATPase, H+ transporting, lysosomal V0 subunit A2 [Source:MGI Symbol;Acc:MGI:104855]
Coordinates
chr5:124636015-124639283:+
Coord C1 exon
chr5:124636015-124636112
Coord A exon
chr5:124637486-124637623
Coord C2 exon
chr5:124639195-124639283
Length
138 bp
Sequences
Splice sites
3' ss Seq
CCGCAGCTGTGTCATTGCAGGAA
3' ss Score
6.15
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
Exon sequences
Seq C1 exon
TGTACCTGGTGCAGGAAATCACCAGAGCTGATATTCCCCTGCCTGAAGGAGAGGCCAGTCCTCCCGCACCACCTCTTAAACATGTCCTAGAAATGCAG
Seq A exon
GAACAGCTGCAGAAGCTGGAGGTGGAGCTCAGAGAAGTCACCAAGAACAAGGAGAAGCTGAGGAAGAACCTGTTGGAGCTGGTGGAGTACACCCACATGCTGAGGGTCACGAAGACCTTCCTCAAGCGGAATGTGGAG
Seq C2 exon
TTTGAGCCCACGTATGAAGAGTTTCCCGCCTTAGAGAACGACTCTCTGTTGGACTACAGCTGCATGCAGCGGCTGGGCGCCAAGCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038023-'5-10,'5-7,10-10=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(23.2=100)
A:
PF0149614=V_ATPase_I=FE(32.6=100)
C2:
PF0149614=V_ATPase_I=FE(19.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGCAGGAAATCACCAG
R:
CTGCATGCAGCTGTAGTCCAA
Band lengths:
162-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types