HsaEX6069914 @ hg38
Exon Skipping
Gene
ENSG00000185344 | ATP6V0A2
Description
ATPase H+ transporting V0 subunit a2 [Source:HGNC Symbol;Acc:HGNC:18481]
Coordinates
chr12:123722351-123726285:+
Coord C1 exon
chr12:123722351-123722448
Coord A exon
chr12:123724660-123724791
Coord C2 exon
chr12:123726197-123726285
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTGTTTTAGGAGCAGTTG
3' ss Score
-2.49
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
TGTATTTGGTACAGGAAATTAATAGAGCTGATATTCCCCTTCCTGAAGGAGAGGCCAGCCCTCCTGCGCCACCCCTGAAACAGGTTCTAGAAATGCAG
Seq A exon
TTGCAGAAGCTCGAGGTTGAACTGAGAGAAGTCACTAAGAACAAGGAGAAACTGAGGAAAAACTTGCTGGAACTGATAGAGTACACTCACATGCTGAGAGTGACAAAGACCTTTGTGAAACGCAATGTTGAG
Seq C2 exon
TTTGAACCCACTTATGAAGAATTCCCTTCCTTAGAGAGTGATTCTTTGTTGGATTACAGCTGTATGCAGAGGCTGGGAGCAAAACTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185344-'9-8,'9-7,10-8
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(3.9=100)
A:
PF0149614=V_ATPase_I=FE(14.0=100)
C2:
PF0149614=V_ATPase_I=FE(3.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTACAGGAAATTAATAGAGCTGA
R:
CAGTTTTGCTCCCAGCCTCTG
Band lengths:
179-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains