DreEX6087057 @ danRer10
Exon Skipping
Gene
ENSDARG00000035538 | atp6v0a2a
Description
ATPase, H+ transporting, lysosomal V0 subunit a2a [Source:ZFIN;Acc:ZDB-GENE-091113-4]
Coordinates
chr10:8060842-8066175:-
Coord C1 exon
chr10:8066078-8066175
Coord A exon
chr10:8063209-8063346
Coord C2 exon
chr10:8060842-8060939
Length
138 bp
Sequences
Splice sites
3' ss Seq
TGCTACTGGTGTGTTTTCAGGAG
3' ss Score
8.18
5' ss Seq
AGGGTGCGA
5' ss Score
4.08
Exon sequences
Seq C1 exon
GGTATCTGCTGAGGGAAATTAGGAAGGCTAATATTGCTGTGCCAGAGGCTGAAGTTCCTCCTGTTGCTCCTGCACCCAAAAATGTCTTGGAGATCATG
Seq A exon
GAGCAGCTGCAGAGGCTGGAGGTGGAGCTCAGTGAAGTAGCCAAGAATAAAGAGAAGCTGCAGAGGAACCTGCTGGAGCTGATGGAGTACACACACATGCTGAGGATCACACGCTCATTCGTGCACAGCCGCTCCAGG
Seq C2 exon
CATGAAGCCTTGGGCCCTCAGTATGAAGAGTTTCCGTCTTTGGAGACTGAATCGGTGACAGGCTGCACCAGTATGCAGAGACTTGGTGCCAAACTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035538-'4-7,'4-5,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.0=100)
A:
PF0149614=V_ATPase_I=FE(5.6=100)
C2:
PF0149614=V_ATPase_I=FE(4.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTATCTGCTGAGGGAAATTAGGA
R:
CGAGTTTGGCACCAAGTCTCT
Band lengths:
195-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]