GgaEX6013589 @ galGal4
Exon Skipping
Gene
ENSGALG00000003194 | ATP6V0A2
Description
V-type proton ATPase 116 kDa subunit a isoform 2 [Source:RefSeq peptide;Acc:NP_990054]
Coordinates
chr15:4919710-4921160:-
Coord C1 exon
chr15:4921063-4921160
Coord A exon
chr15:4920102-4920239
Coord C2 exon
chr15:4919710-4919810
Length
138 bp
Sequences
Splice sites
3' ss Seq
GCTTTTATTTTGTATAACAGGAA
3' ss Score
8.46
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
GTTATTTAGTACAAGAAATTAAAAAGGCGGATATTCCTCTTCCTGAGGGAGATGTTGCTCCTCCTGCCCCCTTGCTGAAACACATTTTAGAAATCCAG
Seq A exon
GAACAGTTGCAGAAGCTGGAGACAGAACTGAGGGAAGTAAATAAAAACAAAGAGAAGCTGAGGAAAAACTTGATTGAACTCACGGAGTACACGTGCATGTTGGATGTCACACAAACGTTTGTCAGGAGAGCAGCTGAG
Seq C2 exon
TATGAGTCCCACTTGCATATAAATTATGAAGAATTTCCATCAGTGGAAAATGAGCCATTTGCAGATTACAACTGTATGCACAGACTGGGTGCCAAGCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003194-'8-7,'8-6,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.0=100),PF102244=DUF2205=PU(27.0=51.5)
A:
PF0149614=V_ATPase_I=FE(5.6=100),PF102244=DUF2205=PD(69.8=95.7)
C2:
PF0149614=V_ATPase_I=FE(4.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGTACAAGAAATTAAAAAGGCGGA
R:
CCCAGCTTGGCACCCAGT
Band lengths:
194-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]