BtaEX6072261 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007272 | ATP6V0A2
Description
Bos taurus ATPase, H+ transporting, lysosomal V0 subunit a2 (ATP6V0A2), mRNA. [Source:RefSeq mRNA;Acc:NM_176637]
Coordinates
chr17:54230017-54232771:-
Coord C1 exon
chr17:54232674-54232771
Coord A exon
chr17:54231180-54231317
Coord C2 exon
chr17:54230017-54230105
Length
138 bp
Sequences
Splice sites
3' ss Seq
GGACTGTCGTTTCATTTCAGGAG
3' ss Score
7.49
5' ss Seq
GAGGTACTT
5' ss Score
7.82
Exon sequences
Seq C1 exon
CATACTTGGTGCAGGAAATCAATAGAGCGGATATTCCCCTCCCTGAGGGGGACACCAGTCCTCCGGCACCACCTCTGAAACAAGTGCTGGAAATGCAG
Seq A exon
GAGCAGTTGCAGAAGCTGGAGGTTGAGCTGAGAGAGGTCACTAAGAATAAGGAGAAGCTGAGGAAGAACCTGCTGGAGCTAATTGAGTACACCCACATGCTGCGAGTGACCAAGACTTTCGTCAAGCGCAATGTGGAG
Seq C2 exon
TTCGAACCCACTTACGAAGAGTTCCCTCCCTTGGAGAACGAGTCTTTGTTGGACTACAGCTGTATGCAGAGGCTGGGAGCAAAACTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007272-'5-5,'5-3,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.455 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(3.9=100)
A:
PF0149614=V_ATPase_I=FE(5.5=100)
C2:
PF0149614=V_ATPase_I=FE(3.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATACTTGGTGCAGGAAATCAAT
R:
CCAGTTTTGCTCCCAGCCTC
Band lengths:
186-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]