RnoEX0013291 @ rn6
Exon Skipping
Gene
ENSRNOG00000013428 | Atp6v0a4
Description
ATPase H+ transporting V0 subunit a4 [Source:RGD Symbol;Acc:1305055]
Coordinates
chr4:65773612-65776273:-
Coord C1 exon
chr4:65776148-65776273
Coord A exon
chr4:65775471-65775565
Coord C2 exon
chr4:65773612-65773738
Length
95 bp
Sequences
Splice sites
3' ss Seq
TCCCGTGTTTTGTCTTTCAGACA
3' ss Score
11.27
5' ss Seq
GGGGTTAGT
5' ss Score
2.75
Exon sequences
Seq C1 exon
ACTACTCTGGAGAAGTTGGAAGGAGAGCTACAGGAAGCCAACCAGAGCCATCAGGCTTTGAAGAAGAGCTTTTTGGAACTGACAGAGCTCAAATACCTCCTGAAGAAAACCCAGGACTTTTTTGAG
Seq A exon
ACAGAAACCAACTTAGGTGAAGATTTCTTTGTTGAAGACACTTCAGGTCTCTTGGAGCTAAGAGCCATGCCTGCATTCATGACTGGAAAGTTGGG
Seq C2 exon
GTTCACGGCCGGTGTGATAAACAGGGAGAGGATGGCTTCCTTCGAGAGGCTGCTGTGGAGAGTTTGCCGGGGAAACGTATATTTGAAGTTCAGCGAGATGGACACACTTCTGGAGGATCCTGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013428_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(5.2=100)
A:
PF0149614=V_ATPase_I=FE(3.9=100)
C2:
PF0149614=V_ATPase_I=FE(5.5=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTACAGGAAGCCAACCAGA
R:
ATACGTTTCCCCGGCAAACTC
Band lengths:
181-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]