GgaEX6002682 @ galGal4
Exon Skipping
Gene
ENSGALG00000013007 | CACNA2D4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:HGNC:20202]
Coordinates
chr1:61209244-61211193:-
Coord C1 exon
chr1:61211133-61211193
Coord A exon
chr1:61210422-61210572
Coord C2 exon
chr1:61209244-61209318
Length
151 bp
Sequences
Splice sites
3' ss Seq
TACTCTTTTTTTTTATTGAGGTA
3' ss Score
-2.89
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
GAATAAAGTGGCTACCAGATGAGAATGGGGTCATCTCCTTCGACTGCAGGAACCGTGGCTG
Seq A exon
GTACATCCAAGCAGCCACATCTCCCAAGGACATCGTCATCATTGTGGATGTCAGTGGAAGCATGAAGGGCCTGCGGATGACCATTGCCAAACACACCATTGTCACCATTCTAGATACTCTTGGGGAAAATGACTTTGTCAATATCATTGCA
Seq C2 exon
TACAATGATTATGTTCATTTTATTGAACCCTGTTTTAAGGGTATCCTGGTCCAAGCAGACAGAGACAACAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013007-'8-7,'8-6,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083996=VWA_N=PD(2.6=14.3)
A:
PF137681=VWA_3=PU(24.7=80.4)
C2:
PF137681=VWA_3=FE(14.5=100)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGCTACCAGATGAGAATGG
R:
CTCTCTGTTGTCTCTGTCTGCT
Band lengths:
130-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]