RnoEX6014848 @ rn6
Exon Skipping
Gene
ENSRNOG00000008031 | Cacna2d4
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 4 [Source:RGD Symbol;Acc:1562038]
Coordinates
chr4:151328161-151330413:+
Coord C1 exon
chr4:151328161-151328221
Coord A exon
chr4:151328665-151328815
Coord C2 exon
chr4:151330339-151330413
Length
151 bp
Sequences
Splice sites
3' ss Seq
TGCCTTTCTTTCTGCTAAAGGTA
3' ss Score
8.43
5' ss Seq
GCGGTAACG
5' ss Score
6.71
Exon sequences
Seq C1 exon
GGATAAAGTGGACACCTGATGAAAATGGAGTCATCGCCTTCGACTGCAGAAACCGTGGCTG
Seq A exon
GTACATACAAGCCGCCACTTCTCCCAAGGACATCGTCATCCTGGTGGACATGAGCGGCAGCATGAAGGGGCTGAGGATGGCCATTGCCAAACACACCGTCACAACCATATTGGACACCCTGGGGGAGAACGACTTCGTGAACATCATCGCG
Seq C2 exon
TACAATGACTATGTCCACTACATCGAGCCCTGCTTCAAAGGCATCCTCGTCCAAGCGGATCGAGACAACCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008031-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083996=VWA_N=PD(2.6=14.3)
A:
PF135191=VWA_2=PU(22.2=78.4)
C2:
PF135191=VWA_2=FE(13.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATAAAGTGGACACCTGATGA
R:
GTTGTCTCGATCCGCTTGGAC
Band lengths:
130-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]