MmuEX6006564 @ mm10
Exon Skipping
Gene
ENSMUSG00000041460 | Cacna2d4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:MGI Symbol;Acc:MGI:2442632]
Coordinates
chr6:119267807-119270828:+
Coord C1 exon
chr6:119267807-119267867
Coord A exon
chr6:119268196-119268346
Coord C2 exon
chr6:119270754-119270828
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTGCCTTTCTTTCTGATAAGGTA
3' ss Score
8.34
5' ss Seq
GCGGTAATG
5' ss Score
5.76
Exon sequences
Seq C1 exon
GAATAAAGTGGATGCCTGATGAAAACGGAGTCATCGCCTTCGACTGCAGAAACCGTGGCTG
Seq A exon
GTACATACAAGCTGCCACATCTCCCAAAGACATCGTAATTCTGGTGGACATTAGCGGCAGCATGAAGGGGCTGAGGATGGCTATCGCCAAGCACACCATTACCACCATATTGGACACCCTGGGAGAGAACGACTTCGTGAACATCATCGCG
Seq C2 exon
TACAATGACTACGTCCACTACATTGAGCCCTGCTTCAAAGGCATCCTTGTCCAAGCAGATCGAGACAACCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041460_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083996=VWA_N=PD(2.6=14.3)
A:
PF137681=VWA_3=PU(24.7=80.4)
C2:
PF137681=VWA_3=FE(14.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGATGCCTGATGAAAACGG
R:
CTCTCGGTTGTCTCGATCTGC
Band lengths:
130-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types