GgaEX6003039 @ galGal4
Exon Skipping
Gene
ENSGALG00000014178 | SCUBE1
Description
signal peptide, CUB domain, EGF-like 1 [Source:HGNC Symbol;Acc:HGNC:13441]
Coordinates
chr1:68738853-68762489:-
Coord C1 exon
chr1:68762367-68762489
Coord A exon
chr1:68740471-68740587
Coord C2 exon
chr1:68738853-68738975
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGCTTTCTCTATGAATTCAGATA
3' ss Score
6.36
5' ss Seq
GAGGTTTGG
5' ss Score
3.53
Exon sequences
Seq C1 exon
ATATTGATGAGTGCTTGGTAAACAATGGTGGCTGTGACCATTTCTGCCGAAACACAGTTGGCAGCTTTGAATGCAGCTGCCAGAAAGGCTATAAACTACTCACAGATGAACGGACCTGTCAAG
Seq A exon
ATATAGACGAGTGTTCCTTTGAGAGGACCTGTGATCACACCTGCATCAACTACCCTGGAAGCTTCGAATGTCTCTGCCATAAAGGCTACACCTTGTACGGACTGACGCACTGTGGAG
Seq C2 exon
ATATTGATGAATGCAGCATCAGCAATGGCAGCTGTGACTATGGGTGTCTGAATACAATGGGAAGCTATGAGTGTGTCTGTCCACCTGGAAAGAAACTGCACTGGAATAAAAAGGACTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014178-'12-17,'12-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.0)
C2:
PF146701=FXa_inhibition=WD(100=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGAGTGCTTGGTAAACAATGG
R:
AATGCAGTCCTTTTTATTCCAGTGC
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]