GgaEX6006303 @ galGal3
Exon Skipping
Gene
ENSGALG00000017106 | ATP8A2
Description
NA
Coordinates
chr1:181087753-181097438:+
Coord C1 exon
chr1:181087753-181087828
Coord A exon
chr1:181096318-181096423
Coord C2 exon
chr1:181097356-181097438
Length
106 bp
Sequences
Splice sites
3' ss Seq
TCTCCTGGTGTTCTGTCTAGCCC
3' ss Score
7.42
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
CCAGCTACCTCCTCCTACCAGTGAATCGTGTGAATTTGATGACCCAAGACTGCTGCAAAACATTGAAAATGACCAT
Seq A exon
CCCACAGCTGTACACATACAGGAGTTCCTCACTCTGCTGGCTGTATGTCACACTGTAGTTCCTGAGAGACAAGGAAATAAAATAATCTACCAGGCCTCCTCTCCAG
Seq C2 exon
ATGAAGGGGCTTTAGTGAAAGGAGCAAAAAAGCTTGGTTATGTCTTCACAGGAAGGACTCCACATTCAGTTATCATTGATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017106-'14-16,'14-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.577 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127102=HAD=FE(6.1=100)
A:
PF127102=HAD=FE(8.6=100)
C2:
PF127102=HAD=FE(6.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTACCTCCTCCTACCAG
R:
CGCATCAATGATAACTGAATGTGGA
Band lengths:
159-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]