RnoEX0013436 @ rn6
Exon Skipping
Gene
ENSRNOG00000008053 | Atp8a2
Description
ATPase phospholipid transporting 8A2 [Source:RGD Symbol;Acc:1594597]
Coordinates
chr15:40323605-40327502:-
Coord C1 exon
chr15:40327427-40327502
Coord A exon
chr15:40324308-40324413
Coord C2 exon
chr15:40323605-40323687
Length
106 bp
Sequences
Splice sites
3' ss Seq
CTGGTTCTTGCTGCTTTTAGCCC
3' ss Score
6.97
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TCGGATGACTTCTTGCCCCAGTGACTCATGTGACTTCAATGATCCCAGGCTGTTAAAGAACATCGAGGATGAACAC
Seq A exon
CCCACAGCCCCTTGCATACAAGAGTTCCTTACCCTGCTGGCTGTGTGTCACACCGTTGTCCCTGAGAAGGATGGTGATGAAATTATCTACCAGGCTTCATCTCCAG
Seq C2 exon
ATGAAGCTGCTTTGGTCAAAGGGGCTAAGAAGCTTGGCTTCGTGTTTACCGGGAGGACGCCATACTCGGTCATCATCGAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008053-'30-25,'30-22,31-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127102=HAD=FE(6.2=100)
A:
PF132461=Hydrolase_like2=PU(22.0=61.1),PF0070221=Hydrolase=PU(6.2=44.4)
C2:
PF132461=Hydrolase_like2=FE(27.0=100),PF0070221=Hydrolase=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGACTTCTTGCCCCAGTG
R:
CGCTTCGATGATGACCGAGTA
Band lengths:
157-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]