BtaEX6056489 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025428 | ATP8A2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:HGNC Symbol;Acc:HGNC:13533]
Coordinates
chr12:33490901-33495042:+
Coord C1 exon
chr12:33490901-33490976
Coord A exon
chr12:33494276-33494381
Coord C2 exon
chr12:33494960-33495042
Length
106 bp
Sequences
Splice sites
3' ss Seq
GCTGTGTTCCTTTCTTACAGCCC
3' ss Score
10.94
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
TCAGTCTCCTTGCTTCATCTCAGACGCCTACGAATTCAATGACCCAGCATTATTGCAGAACTTTGAGAATGATCAT
Seq A exon
CCCACGAAAGAGTATATAAAGGAATTTCTTACCCTGTTGTGTGTGTGCCACACTGTTGTTCCAGAGAGAGAGGGAAACAACATAAGCTACCAGGCCTCCTCTCCAG
Seq C2 exon
ATGAAGCAGCTTTAGTGAAAGGAGCCAAGAAACTTGGCTTTGTTTTCACTACAAGGATGCCGAACTCGGTCACCATAGAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025428-'16-19,'16-18,17-19=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.056 C2=0.000
Domain overlap (PFAM):
C1:
PF127102=HAD=FE(6.1=100)
A:
PF127102=HAD=FE(8.5=100)
C2:
PF127102=HAD=FE(6.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCTTGCTTCATCTCAGACG
R:
GCTTCTATGGTGACCGAGTTCG
Band lengths:
155-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]