DreEX6094852 @ danRer10
Exon Skipping
Gene
ENSDARG00000077492 | atp8a2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:ZFIN;Acc:ZDB-GENE-100209-2]
Coordinates
chr24:21300304-21302682:-
Coord C1 exon
chr24:21302607-21302682
Coord A exon
chr24:21302397-21302502
Coord C2 exon
chr24:21300304-21300386
Length
106 bp
Sequences
Splice sites
3' ss Seq
CTTTTTGTGTGTGTCTGTAGCCC
3' ss Score
9.41
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
TCATCTTCCCTCTACAAGTCATAATTCTACTGAGTTTGATGATCCTGCTCTTATCCAGAACATTGAGAAGAACCAT
Seq A exon
CCCACATCGCCACAGATTTGTGAGTTTTTGACCATGATGGCTGTTTGTCATACTGTTGTTCCTGAGAGAGAAGATAACCAAATTATCTACCAAGCTTCCTCACCAG
Seq C2 exon
ATGAAGGAGCGCTGGTAAAAGGTGCCAAAAGTCTGGGCTTTGTTTTTACTGCACGAACGCCACATTCAGTCATCATAGAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077492-'22-21,'22-20,23-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.538 A=0.056 C2=0.000
Domain overlap (PFAM):
C1:
PF127102=HAD=FE(6.2=100)
A:
PF127102=HAD=FE(8.6=100)
C2:
PF127102=HAD=FE(6.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCTTCCCTCTACAAGTCATAAT
R:
TCTATGATGACTGAATGTGGCGT
Band lengths:
155-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]