GgaEX0020985 @ galGal4
Exon Skipping
Gene
ENSGALG00000014236 | ATP8A1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:HGNC Symbol;Acc:HGNC:13531]
Coordinates
chr4:67796259-67798441:+
Coord C1 exon
chr4:67796259-67796331
Coord A exon
chr4:67797699-67797804
Coord C2 exon
chr4:67798359-67798441
Length
106 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTGCCATTTTTTTAGCCG
3' ss Score
6.93
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCAGGGCTCACAAAATGGAGACGAAAAAATGTTTAGTGACTCATCCCTACTGGAGAATCTTCAAAATAATCAT
Seq A exon
CCGACTGCACCTATTATATGTGAGTTTTTGACAATGATGGCAGTGTGTCATACAGCTGTTCCAGAAAGAGAAGGTGATAAGATTATATATCAAGCAGCATCTCCAG
Seq C2 exon
ATGAAGGAGCATTGGTCAGAGCAGCCAGGCATCTTCGTTTTGTATTCACTGGAAGGACACCTGACTCCGTAATTATAGAGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014236-'25-28,'25-27,26-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.240 A=0.056 C2=0.000
Domain overlap (PFAM):
C1:
PF127102=HAD=FE(5.9=100)
A:
PF132461=Hydrolase_like2=PU(21.8=61.1)
C2:
PF132461=Hydrolase_like2=FE(26.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGGCTCACAAAATGGAGA
R:
ACTCTATAATTACGGAGTCAGGTGT
Band lengths:
154-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]