HsaEX6084128 @ hg19
Exon Skipping
Gene
ENSG00000124406 | ATP8A1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:HGNC Symbol;Acc:13531]
Coordinates
chr4:42553215-42558057:-
Coord C1 exon
chr4:42557985-42558057
Coord A exon
chr4:42554522-42554627
Coord C2 exon
chr4:42553215-42553297
Length
106 bp
Sequences
Splice sites
3' ss Seq
TATGTGTTTATTTTTCACAGCCA
3' ss Score
7.77
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
GCAGAACTCACAGTTTGGAGATGAAAAAACATTTAGTGATTCATCATTGCTGGAAAATCTCCAAAATAATCAT
Seq A exon
CCAACTGCACCTATAATATGTGAATTTCTTACAATGATGGCAGTCTGTCACACAGCAGTGCCAGAGCGAGAAGGTGACAAGATTATTTATCAAGCAGCATCTCCAG
Seq C2 exon
ATGAGGGAGCATTGGTCAGAGCAGCCAAGCAATTGAATTTTGTTTTCACTGGAAGAACACCCGACTCGGTGATTATAGATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124406-'22-23,'22-22,24-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127102=HAD=FE(6.2=100)
A:
PF132461=Hydrolase_like2=PU(21.8=61.1)
C2:
PF132461=Hydrolase_like2=FE(26.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAACTCACAGTTTGGAGA
R:
AGTCGGGTGTTCTTCCAGTGA
Band lengths:
139-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)