MmuEX6017965 @ mm10
Exon Skipping
Gene
ENSMUSG00000037685 | Atp8a1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:MGI Symbol;Acc:MGI:1330848]
Coordinates
chr5:67747278-67751085:-
Coord C1 exon
chr5:67751013-67751085
Coord A exon
chr5:67749051-67749156
Coord C2 exon
chr5:67747278-67747360
Length
106 bp
Sequences
Splice sites
3' ss Seq
TATGTGTTTATTCCTCACAGCCA
3' ss Score
7.96
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GCAGAGCTCACAGTTTGGAGATGAAAAAACCTTTAATGACCCGTCGTTGCTGGACAATCTCCAGAATAACCAC
Seq A exon
CCAACCGCACCTATCATCTGTGAATTTCTCACAATGATGGCCGTCTGCCACACAGCTGTACCGGAGAGAGAAGGGGACAAGATCATTTATCAGGCTGCATCGCCAG
Seq C2 exon
ATGAGGGTGCACTGGTCAGAGCCGCCAAGCAGTTGAATTTTGTCTTCACTGGAAGAACTCCTGACTCTGTCATCATAGATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037685_MULTIEX3-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.193 A=0.022 C2=0.000
Domain overlap (PFAM):
C1:
PF127102=HAD=FE(5.9=100)
A:
PF127102=HAD=FE(8.6=100)
C2:
PF127102=HAD=FE(6.7=100)
Main Skipping Isoform:
ENSMUST00000037380fB609
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGCTCACAGTTTGGAGA
R:
TGAATCTATGATGACAGAGTCAGGA
Band lengths:
156-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types