BtaEX0005023 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011156 | ATP8A1
Description
probable phospholipid-transporting ATPase IA [Source:RefSeq peptide;Acc:NP_777263]
Coordinates
chr6:63027811-63033402:-
Coord C1 exon
chr6:63033330-63033402
Coord A exon
chr6:63030387-63030492
Coord C2 exon
chr6:63027811-63027893
Length
106 bp
Sequences
Splice sites
3' ss Seq
GGTGTGTTTATTTCTTACAGCCC
3' ss Score
7.95
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
GCAGAACTCACAGTTTGGAGATGAAAAAACATTTAGTGATTCATCATTGCTGGAAAACCTCCAAAATAATCAT
Seq A exon
CCCACTGCACCAATAATATGTGAATTTCTTACAATGATGGCCGTGTGTCACACGGCAGTACCAGAGCGGGAAGGTGATAAGATTATTTACCAGGCAGCATCTCCAG
Seq C2 exon
ATGAGGGAGCCTTGGTCAGAGCAGCCAAGCAGTTGAATTTTGTTTTCACTGGAAGAACGCCTGACTCAGTGATTATAGATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011156-'20-23,'20-22,21-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127102=HAD=FE(6.2=100)
A:
PF127102=HAD=FE(9.0=100)
C2:
PF127102=HAD=FE(6.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAACTCACAGTTTGGAGA
R:
AATCTATAATCACTGAGTCAGGCGT
Band lengths:
154-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development