MmuEX6017965 @ mm9
Exon Skipping
Gene
ENSMUSG00000037685 | Atp8a1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:MGI Symbol;Acc:MGI:1330848]
Coordinates
chr5:68138517-68142324:-
Coord C1 exon
chr5:68142252-68142324
Coord A exon
chr5:68140290-68140395
Coord C2 exon
chr5:68138517-68138599
Length
106 bp
Sequences
Splice sites
3' ss Seq
TATGTGTTTATTCCTCACAGCCA
3' ss Score
7.96
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GCAGAGCTCACAGTTTGGAGATGAAAAAACCTTTAATGACCCGTCGTTGCTGGACAATCTCCAGAATAACCAC
Seq A exon
CCAACCGCACCTATCATCTGTGAATTTCTCACAATGATGGCCGTCTGCCACACAGCTGTACCGGAGAGAGAAGGGGACAAGATCATTTATCAGGCTGCATCGCCAG
Seq C2 exon
ATGAGGGTGCACTGGTCAGAGCCGCCAAGCAGTTGAATTTTGTCTTCACTGGAAGAACTCCTGACTCTGTCATCATAGATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037685-'29-26,'29-25,31-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF127102=HAD=PD(34.4=88.0)
A:
PF127102=HAD=FE(8.6=100)
C2:
PF127102=HAD=FE(6.7=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGCTCACAGTTTGGAGA
R:
TGAATCTATGATGACAGAGTCAGGA
Band lengths:
156-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: