RnoEX0013409 @ rn6
Exon Skipping
Gene
ENSRNOG00000034200 | Atp8a1
Description
ATPase phospholipid transporting 8A1 [Source:RGD Symbol;Acc:1309619]
Coordinates
chr14:42079272-42082555:+
Coord C1 exon
chr14:42079272-42079344
Coord A exon
chr14:42081225-42081330
Coord C2 exon
chr14:42082473-42082555
Length
106 bp
Sequences
Splice sites
3' ss Seq
TATGCGTTTATTCCTCACAGCCA
3' ss Score
7.47
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GCAGAGCTCACAGTTTGGAGATGAGAAAACCTTTAATGATCCGTCGTTGCTGGAAAATCTTCAGAATAACCAT
Seq A exon
CCAACCGCACCTATCATCTGTGAATTTCTCACAATGATGGCCGTCTGCCACACAGCTGTACCAGAGAGAGACGGGGAGAAGATCATTTATCAGGCAGCGTCGCCAG
Seq C2 exon
ACGAGGGAGCACTGGTCAGAGCCGCCAAGCAGTTGAATTTTGTCTTCACTGGAAGAACTCCTGACTCTGTCATCATAGATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034200-'18-21,'18-20,19-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.144 A=0.011 C2=0.000
Domain overlap (PFAM):
C1:
PF127102=HAD=FE(6.2=100)
A:
PF127102=HAD=FE(9.0=100)
C2:
PF127102=HAD=FE(6.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGCTCACAGTTTGGAGA
R:
TGAATCTATGATGACAGAGTCAGGA
Band lengths:
156-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]