GgaEX0020985 @ galGal3
Exon Skipping
Gene
ENSGALG00000014236 | ATP8A1
Description
NA
Coordinates
chr4:70088339-70090521:+
Coord C1 exon
chr4:70088339-70088411
Coord A exon
chr4:70089779-70089884
Coord C2 exon
chr4:70090439-70090521
Length
106 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTGCCATTTTTTTAGCCG
3' ss Score
6.93
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCAGGGCTCACAAAATGGAGACGAAAAAATGTTTAGTGACTCATCCCTACTGGAGAATCTTCAAAATAATCAT
Seq A exon
CCGACTGCACCTATTATATGTGAGTTTTTGACAATGATGGCAGTGTGTCATACAGCTGTTCCAGAAAGAGAAGGTGATAAGATTATATATCAAGCAGCATCTCCAG
Seq C2 exon
ATGAAGGAGCATTGGTCAGAGCAGCCAGGCATCTTCGTTTTGTATTCACTGGAAGGACACCTGACTCCGTAATTATAGAGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014236_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF127102=HAD=FE(6.2=100)
A:
PF127102=HAD=FE(9.0=100)
C2:
PF127102=HAD=FE(6.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGGCTCACAAAATGGAGA
R:
ACTCTATAATTACGGAGTCAGGTGT
Band lengths:
154-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]