MmuEX6041887 @ mm10
Exon Skipping
Gene
ENSMUSG00000021983 | Atp8a2
Description
ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 [Source:MGI Symbol;Acc:MGI:1354710]
Coordinates
chr14:60016789-60020834:-
Coord C1 exon
chr14:60020759-60020834
Coord A exon
chr14:60017560-60017665
Coord C2 exon
chr14:60016789-60016871
Length
106 bp
Sequences
Splice sites
3' ss Seq
CTGTGTCTTACTGCTTTTAGCCT
3' ss Score
6.76
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CCGGATGACTTCTTGTACCAATGACTCATGTGACTTCAATGATCCCAGGCTGTTAAAGAACATCGAGGATCAGCAC
Seq A exon
CCTACAGCCCCTTGCATACAAGAGTTCCTTACCCTGCTGGCTGTGTGTCACACCGTCGTCCCCGAGAAGGATGGAGATGAAATTATCTACCAAGCCTCGTCCCCAG
Seq C2 exon
ATGAAGCTGCTTTGGTCAAAGGAGCTAAGAAGCTTGGCTTTGTGTTTACCGGGAGGACGCCGTACTCGGTCATCATCGAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021983-'36-29,'36-28,37-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127102=HAD=FE(6.2=100)
A:
PF127102=HAD=FE(8.6=100)
C2:
PF127102=HAD=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGATGACTTCTTGTACCAA
R:
CGCTTCGATGATGACCGAGTA
Band lengths:
159-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types