GgaEX6006303 @ galGal4
Exon Skipping
Gene
ENSGALG00000017106 | ATP8A2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:HGNC Symbol;Acc:HGNC:13533]
Coordinates
chr1:176041231-176050916:+
Coord C1 exon
chr1:176041231-176041306
Coord A exon
chr1:176049796-176049901
Coord C2 exon
chr1:176050834-176050916
Length
106 bp
Sequences
Splice sites
3' ss Seq
TCTCCTGGTGTTCTGTCTAGCCC
3' ss Score
7.42
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
CCAGCTACCTCCTCCTACCAGTGAATCGTGTGAATTTGATGACCCAAGACTGCTGCAAAACATTGAAAATGACCAT
Seq A exon
CCCACAGCTGTACACATACAGGAGTTCCTCACTCTGCTGGCTGTATGTCACACTGTAGTTCCTGAGAGACAAGGAAATAAAATAATCTACCAGGCCTCCTCTCCAG
Seq C2 exon
ATGAAGGGGCTTTAGTGAAAGGAGCAAAAAAGCTTGGTTATGTCTTCACAGGAAGGACTCCACATTCAGTTATCATTGATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017106-'23-28,'23-26,25-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.548 A=0.037 C2=0.000
Domain overlap (PFAM):
C1:
PF127102=HAD=FE(35.2=100)
A:
PF132461=Hydrolase_like2=PU(22.0=61.1)
C2:
PF132461=Hydrolase_like2=FE(27.0=100)
Main Skipping Isoform:
ENSGALT00000027641fB5304
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTACCTCCTCCTACCAG
R:
CGCATCAATGATAACTGAATGTGGA
Band lengths:
159-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]