HsaEX6039653 @ hg19
Exon Skipping
Gene
ENSG00000132932 | ATP8A2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:HGNC Symbol;Acc:13533]
Coordinates
chr13:26138094-26145830:+
Coord C1 exon
chr13:26138094-26138169
Coord A exon
chr13:26144905-26145010
Coord C2 exon
chr13:26145748-26145830
Length
106 bp
Sequences
Splice sites
3' ss Seq
ATCCCGCCTCACGTTTGCAGCCC
3' ss Score
8.16
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TCGGATGCCTCCTCCCTGTAGTGATTCCTGTGACTTTGATGACCCCAGGCTGTTGAAGAACATTGAGGATCGCCAT
Seq A exon
CCCACAGCCCCTTGCATTCAGGAGTTCCTCACCCTTCTGGCCGTGTGCCACACGGTTGTTCCTGAGAAGGATGGAGATAACATCATCTACCAGGCCTCTTCCCCAG
Seq C2 exon
ATGAAGCTGCTTTGGTGAAAGGAGCTAAAAAGCTGGGCTTTGTCTTCACAGCCAGAACACCATTCTCAGTCATCATAGAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132932-'16-21,'16-20,18-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127102=HAD=FE(6.2=100)
A:
PF132461=Hydrolase_like2=PU(22.0=61.1)
C2:
PF132461=Hydrolase_like2=FE(27.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCCTCCTCCCTGTAGTGA
R:
CGCTTCTATGATGACTGAGAATGGT
Band lengths:
156-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)