GgaEX6014689 @ galGal3
Exon Skipping
Gene
ENSGALG00000008966 | FBXW5
Description
NA
Coordinates
chr17:900115-902152:+
Coord C1 exon
chr17:900115-900272
Coord A exon
chr17:900872-901046
Coord C2 exon
chr17:902004-902152
Length
175 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTCATCTGCCTGTAGATC
3' ss Score
8.47
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
Exon sequences
Seq C1 exon
CTGCTGTCTCCTGGTATGATGAGTTCCAGAGGCTCTACGACACCATCCCTTGCATTGAAGTGCAGGCCCTGAAGGAGCACAATGACCAGGTGTTGCACCTCAGCTTCTCTCACTCGGGCTGTTTGTTTGCATCGTGCTCCAAAGACTGTACTGTTAAG
Seq A exon
ATCTGGAGCAATGAGTTGGACATCTCCCTGCAGCACAGCTCCAACATGAGGCCGTACAACTGGAGCTACACACAGTTCTCCCAGTTCAACTCCGATGACTCCCTCCTTCTGGTATCAGGTGTCTTTGTGGGGCCTCACAACTCCTCATCAGGAGAGATTGCCGTAATCAGCATGG
Seq C2 exon
AGAACTTCACACTGCTTTCCAGAGTGAGGAATAAACCTTATGATGTATTTGGCTGTTGGCTGAATGAAACCAACTTAATATCTGGCAATCTGCATCGGATTGGGCGTATAACCTCCTGTTCTGTGCTGTGGCTGAACAACGCTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008966-'3-5,'3-3,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(89.7=66.0)
A:
PF0040027=WD40=PD(5.1=3.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACACCATCCCTTGCATTGA
R:
TTCAGCCACAGCACAGAACAG
Band lengths:
257-432
Functional annotations
There are 1 annotated functions for this event
PMID: 21725316
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, coimmunoprecipitation, protein kinase assay, western blot. ELM ID: ELMI003387; ELM sequence: KDDSLLL; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]