GgaEX6014712 @ galGal4
Exon Skipping
Gene
ENSGALG00000008995 | MAMDC4
Description
MAM domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24083]
Coordinates
chr17:555907-556587:-
Coord C1 exon
chr17:556453-556587
Coord A exon
chr17:556096-556223
Coord C2 exon
chr17:555907-556021
Length
128 bp
Sequences
Splice sites
3' ss Seq
GCTGTCCCCCTGTGCTGCAGCGG
3' ss Score
7.18
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTCACTATGTGCACTTCGACACCCGCGTGCTGGGCGCGGGGGGCACCGCTGCCCGGCTGGAGAGCCAACACCTCCCCGCCACCACTGCCGGCTGCCTGCGCTTCTGGTACCACATGGACATCCCGGAGCACCTCA
Seq A exon
CGGGCGGGGAGCTGCAGGTGAAGCTGCAGAGCGCGGCAGGGCAGCACACGGCGTGGAGCGTGGCAGGGCAGCGGAGCCAAGGCTGGCAAAGCAGCACAGTGCCTTTGGAGAGTCCCAGTGAGTTCCAG
Seq C2 exon
ATTGTCTTTGAGATCACCTCGCGGATGTGGCCGATGGACGGCACCGTGGCACTGGATGATATTGAGTACAGTGCCACTGGAGGCTGTGACTCCAACCTAGAGGCCCCAGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008995-'37-45,'37-44,39-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.116 C2=0.026
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(27.1=100)
A:
PF0062918=MAM=FE(25.3=100)
C2:
PF0062918=MAM=PD(18.1=76.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGTGCACTTCGACACCCG
R:
CTTTCCCTGGGGCCTCTAGG
Band lengths:
246-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]