RnoEX6015889 @ rn6
Exon Skipping
Gene
ENSRNOG00000016584 | Mamdc4
Description
MAM domain containing 4 [Source:RGD Symbol;Acc:708583]
Coordinates
chr3:2787433-2787974:-
Coord C1 exon
chr3:2787840-2787974
Coord A exon
chr3:2787617-2787744
Coord C2 exon
chr3:2787433-2787541
Length
128 bp
Sequences
Splice sites
3' ss Seq
TGCCTGCTCCCTGCTCTCAGACA
3' ss Score
9.52
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCCACTTCGCTTTCTTTGAAACCAGCGTGCTAGGTCCTGGGGGCCAGGCAGCCTGGCTGCGCAGTGAGCCACTGCCAGCAACTGCAGTCTCCTGCCTCCACTTCTGGTACTACATGGGCTTTCCTGCGCATTTCT
Seq A exon
ACAAGGGTGAGTTGAGAGTGCTCCTGAGCAGTACCCAAGGACAGCTAGCTGTGTGGCACCGGGGTGGGCACTTGCGGGACCAGTGGCTACAAGTCCAGATTGAAGTGTCCAGCTCTGAGGAGTTCCAG
Seq C2 exon
ATTGTTTTTGAAGCCACTCTGGGTGGCCAGCCGGCTCTAGGGCCCATTGCCCTTGATGATGTGGAGTACTTGGCTGGACAACACTGCAAGCAACCTACACCTAGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016584-'26-27,'26-26,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.027
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(27.1=100)
A:
PF0062918=MAM=FE(25.3=100)
C2:
PF0062918=MAM=PD(18.1=81.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACTTCGCTTTCTTTGAAACC
R:
CCTGGCTAGGTGTAGGTTGCT
Band lengths:
244-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]