BtaEX0021112 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021550 | MAMDC4
Description
Bos taurus MAM domain containing 4 (MAMDC4), mRNA. [Source:RefSeq mRNA;Acc:NM_001143873]
Coordinates
chr11:106326270-106326808:-
Coord C1 exon
chr11:106326674-106326808
Coord A exon
chr11:106326462-106326589
Coord C2 exon
chr11:106326270-106326378
Length
128 bp
Sequences
Splice sites
3' ss Seq
TCTTCACACCCTGCTCCCAGACC
3' ss Score
8
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCCACTTCGCCCTCTTCGAGACCAGCGTGCTGGGCCCAGGGGGCCGAGCGGCCGGGCTCATCAGCCAGCCTCTGCCCCCCACCACGGCCTCTTGTCTGCGCTTCTGGTACCACATGGGCTTCCCCGAGCACTTCT
Seq A exon
ACCAGGGCGAGCTGAGGGTCCTCCTGAGCAGCGCGCAGGGGCAGCTGGCCGTGTGGGGCGCGGGTGGGCGCCACAGACACCAGTGGCTGGAGGGCCAGGTGGACGTGGCCAGTGCCAGAGAGTTCCAG
Seq C2 exon
ATTGTGTTTGAAGCCACGCTGGGCGGCCAGCCGGCCCTGGGGCCCATTGCCCTGGATGACGTTGAGTATCTGGCTGGGCAGCGGTGCCAGCTGTCCACACCCAGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021550-'27-25,'27-24,28-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(27.1=100)
A:
PF0062918=MAM=FE(25.3=100)
C2:
PF0062918=MAM=PD(18.1=81.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTCGCCCTCTTCGAGAC
R:
CCTGGCTGGGTGTGGACAG
Band lengths:
242-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development