MmuEX0027597 @ mm9
Exon Skipping
Gene
ENSMUSG00000026941 | Mamdc4
Description
MAM domain containing 4 [Source:MGI Symbol;Acc:MGI:2685841]
Coordinates
chr2:25419686-25420230:-
Coord C1 exon
chr2:25420096-25420230
Coord A exon
chr2:25419872-25419999
Coord C2 exon
chr2:25419686-25419794
Length
128 bp
Sequences
Splice sites
3' ss Seq
GCCTTGGTCCTTACTCTCAGACA
3' ss Score
7.71
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCCATTTTGCTTTCTTTGAAACCAGCGTGCTAGGTCCTGGGGGCCAGGCAGCCTGGCTGCGCAGTGAGCCACTGCCAGCAACAACAGTCTCATGCCTCCGCTTCTGGTACTACATGGGCTTTCCTGAGCATTTCT
Seq A exon
ACAAGGGTGAGTTGAGAGTGCTCCTGAGCAGTGCCCGAGGCCAGCTAGCTGTGTGGTACCAGGGTGGGCACTTGCGGGACCAGTGGCTACAAGTCCAGATTGAACTGTCCAACTCTGAGGAGTTCCAG
Seq C2 exon
ATTGTTTTTGAAGCCACTCTGGGTGGCCAGCCAGCTCTGGGGCCCATTGCCATTGATGATGTGCAGTACCTGGCTGGACAACAGTGCAAGCAGCCTTCACCTAGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026941-'36-38,'36-37,37-38
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.027
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(27.1=100)
A:
PF0062918=MAM=FE(25.3=100)
C2:
PF0062918=MAM=PD(18.1=81.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATTTTGCTTTCTTTGAAACCA
R:
CTGGCTAGGTGAAGGCTGCTT
Band lengths:
243-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: