DreEX6083745 @ danRer10
Exon Skipping
Gene
ENSDARG00000087633 | MAMDC4
Description
MAM domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24083]
Coordinates
chr21:14690945-14692853:-
Coord C1 exon
chr21:14692728-14692853
Coord A exon
chr21:14691129-14691253
Coord C2 exon
chr21:14690945-14691044
Length
125 bp
Sequences
Splice sites
3' ss Seq
ATTTTTGCTTTCTACTAAAGATG
3' ss Score
5.53
5' ss Seq
CAGGTGACC
5' ss Score
6.54
Exon sequences
Seq C1 exon
GACATTTCCTGGTGCTTCCTAATTCGGATCGGGACACTGCTACCCATAATGCTTTGTTGCTGAGCCCGCATCTGTCATCAACCAAAGGAACCTGTCTGAGCTTTTGGGTCTATCAGCCAACCATAC
Seq A exon
ATGACACCAAACTCACAGTTTGGAGGCGGTCTGAAGAGACCAAACAAGAGTTGCTAACTCTAAATGAGGGTGATCGAAACTGGAAGTACTTTAGTGTCGATATCACCTCAGAAAGCGAGTACCAG
Seq C2 exon
ATTGTACTAGAAGGTTTTAAAGGAGAGAAAGGAGTTCTTGCCTTGGATGATCTACGCTATACAGTAGGAGTGAACTGTGCTGGACAAAAGACTGACCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087633-'19-23,'19-21,20-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.116 A=0.000 C2=0.088
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(26.6=100)
A:
PF0062918=MAM=FE(25.9=100),PF0200911=Rifin_STEVOR=PU(11.6=23.8)
C2:
PF0062918=MAM=PD(17.1=79.4),PF0200911=Rifin_STEVOR=FE(38.4=100),PF054546=DAG1=PU(26.7=47.1),PF086935=SKG6=PU(5.3=5.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATTTCCTGGTGCTTCCTA
R:
TTTGGTCAGTCTTTTGTCCAGCA
Band lengths:
226-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]