GgaEX6015368 @ galGal3
Exon Skipping
Gene
ENSGALG00000002546 | Q90689_CHICK
Description
NA
Coordinates
chr17:8234739-8236738:+
Coord C1 exon
chr17:8234739-8234997
Coord A exon
chr17:8235364-8235476
Coord C2 exon
chr17:8236670-8236738
Length
113 bp
Sequences
Splice sites
3' ss Seq
CCTCCCTGTCCTGCATCCAGGTG
3' ss Score
10.45
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
GGTCCTCCTGGAGAAGTCATCCAGCCTCTGCCCATCCAGTCTTCCAAGAGGACCAGGCGAAACATCGACGCCAGCCAGCTGGTGGACGATGGAAACGCTGACAACTACATGGACTATGCAGATGGCATGGAGGAAATCTTTGGCTCACTGAATTCCTTGAAACTGGAAATTGAACAAATGAAGCATCCATTGGGCACTCAACATAACCCAGCTCGTACCTGCAAGGATCTCCAGCTCTGTCACCCTGATTTCCCAGATG
Seq A exon
GTGAATACTGGGTGGATCCTAACCAAGGATGTTCCAGGGACTCTTTCAAAGTGTACTGTAATTTCACAGCTGGTGGAGAGACTTGCATCTTCCCTGATAAGAAGTCTGAAGGA
Seq C2 exon
GCTAGAATTACTTCTTGGCCAAAGGAAAACCCAGGCTCCTGGTTCAGTGAATTCAAGCGCGGTAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002546-'71-75,'71-74,72-75=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.759 A=0.026 C2=0.130
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(12.7=9.2),PF0141013=COLFI=PU(12.7=31.0)
A:
PF0141013=COLFI=FE(17.5=100)
C2:
PF0141013=COLFI=FE(10.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGGTGGACGATGGAAAC
R:
ACCGCGCTTGAATTCACTGAA
Band lengths:
247-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]