DreEX6083085 @ danRer10
Exon Skipping
Gene
ENSDARG00000012593 | col5a1
Description
procollagen, type V, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-041105-6]
Coordinates
chr21:6785802-6790263:+
Coord C1 exon
chr21:6785802-6786063
Coord A exon
chr21:6787968-6788080
Coord C2 exon
chr21:6790195-6790263
Length
113 bp
Sequences
Splice sites
3' ss Seq
GCTGTTCTGTCTGTTTTCAGGTG
3' ss Score
13.12
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
Exon sequences
Seq C1 exon
GGTCCACCAGGTGATGTCATCCACCCTATGCCTTATCAGTCTTCCCCGAAACGGGCTAAGAGAAACATTGATGCCAGCCAGGTGATGGACGAAGCAACAGATGCCAACTACAAGGACTACGAAGACGGCATGGAGGAAATATTTGGCTCTCTCAACTCTCTGAAGCTGGAGATTGAGCAGATGAAACACCCGCTGGGCACAGAGAGTAACCCCGCACGCACCTGCAAAGACCTGCAGCTGTGCCACCCAGACTTCCCAGATG
Seq A exon
GTGAATACTGGATTGATCCCAACCAGGGCTGCTCCAGAGACTCATTCAAAGTGTACTGTAACTTCACAGCAGGTGGAGAGAGCTGCATCTTCCCCGATAAAAAGAGCGAAGGG
Seq C2 exon
AGCAAAATGGCTCGCTGGCCCAAAGACAGTCCAGGCACATGGTATAGTCGCTACAAGAGAGGGTCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012593-'66-68,'66-66,67-68=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.756 A=0.026 C2=0.130
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(12.9=9.1),PF0141013=COLFI=PU(12.3=29.5)
A:
PF0141013=COLFI=FE(17.5=100)
C2:
PF0141013=COLFI=FE(10.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGATGCCAGCCAGGTGATG
R:
GCGACTATACCATGTGCCTGG
Band lengths:
247-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]