GgaEX6044055 @ galGal3
Exon Skipping
Gene
ENSGALG00000005180 | COL11A1
Description
NA
Coordinates
chr8:12021200-12026186:+
Coord C1 exon
chr8:12021200-12021449
Coord A exon
chr8:12025174-12025286
Coord C2 exon
chr8:12026118-12026186
Length
113 bp
Sequences
Splice sites
3' ss Seq
GCTTTTCTCACTTGTTTCAGGGG
3' ss Score
9.19
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
GGTCCTCCAGGTGAAGTAATTCAGCCACTGCCAATCCAGTCACCCAAAAAGACTAGAAGATCTCCCGATTACATGGTATCTGATGCTGGTGATAATATTCTGGATTATTCTGATGGCATGGAAGAGATCTTTGGTTCACTGAATTCACTGAAGCAAGACATTGAGTATATGAAGTATCCAATGGGCACTCAGAACAACCCAGCCCGAACCTGCAAAGACTTGCAGCTCTGCCACCCAGACTTCCCAGATG
Seq A exon
GGGAATATTGGATTGATCCCAACCAGGGTTGTTCTGGAGACTCCTTCAAAGTGTATTGCAATTTCACAGCAGGTGGGGAAACTTGCATCTACCCAGATAAGAAATCTGAAGGA
Seq C2 exon
GTTAGAATTTCATCTTGGCCAAAAGAGAATCCAGGATCTTGGTTTAGTGAATTTAAGCGTGGCAAACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005180-'67-69,'67-67,68-69=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.643 A=0.026 C2=0.087
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(12.7=9.5),PF0141013=COLFI=PU(12.7=32.1)
A:
PF0141013=COLFI=FE(17.5=100)
C2:
PF0141013=COLFI=FE(10.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAATCCAGTCACCCAAAA
R:
TCCTGGATTCTCTTTTGGCCA
Band lengths:
258-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]