DreEX0022774 @ danRer10
Exon Skipping
Gene
ENSDARG00000026165 | col11a1a
Description
collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
Coordinates
chr24:28691758-28697596:-
Coord C1 exon
chr24:28697350-28697596
Coord A exon
chr24:28693814-28693926
Coord C2 exon
chr24:28691758-28691826
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTATTTTCAAAGGCG
3' ss Score
7.84
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
GGTCCTCCTGGTGAGGTCATCCAGCCTCTGCCCATCCACAGTCCCAAGAAATCCCGTCGCTCCATCGACATGCAGGCGGATGAAGCAGGCACCATGCTGGACTATGGAGAGGGCATGGAGGACATATTCAGCTCTCTCAATAATCTCAAACAGGACATCGAGCGCATGAAGTACCCCATGGGCACGCAAAACAACCCAGCACGAAGCTGTAAAGACCTTCAGCTCGCTCACCCTGAATTCCCAGATG
Seq A exon
GCGAATATTACATTGATCCTAACCAGGGCTGCTCTGGAGACTCCTTCAAAGTGTACTGCAACTTCACAGCAGGAGGAGAGACCTGCATCTTCCCTGATAAAAAGTCAAATGGA
Seq C2 exon
GTGAGAATATCTTCATGGCCCAAAGAGGTGCCCGGCTCCTGGTTCAGTGAATTTAAGCGTGGCAAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026165-'70-69,'70-68,73-69
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.831 A=0.053 C2=0.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(13.3=9.6),PF0141013=COLFI=PU(12.7=32.5)
A:
PF0141013=COLFI=FE(17.5=100)
C2:
PF0141013=COLFI=FE(10.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAAATCCCGTCGCTCCAT
R:
AATTCACTGAACCAGGAGCCG
Band lengths:
256-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]