BtaEX6016249 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021217 | COL11A1
Description
Bos taurus collagen, type XI, alpha 1 (COL11A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001166509]
Coordinates
chr3:40669932-40676161:+
Coord C1 exon
chr3:40669932-40670181
Coord A exon
chr3:40673470-40673582
Coord C2 exon
chr3:40676093-40676161
Length
113 bp
Sequences
Splice sites
3' ss Seq
TATTTTTTTTCTGCTTTCAGGTG
3' ss Score
11.8
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
GGTCCACCAGGTGAAGTCATACAGCCTTTACCAATCTTGTCACCCAAAAAAACAAGAAGACATGCTGAAAGCACGCAAGCAGATGCAGGTGATAATATTCTGGATTACAATGATGGAATGGAGGAAATATTTGGTTCCCTCAATTCCTTGAAACAAGACATCGAGCATATGAAGTTTCCAATGGGGACACAGACCAATCCAGCCCGAACTTGCAAAGATCTGCAACTCAGCCACCCTGACTTCCCAGATG
Seq A exon
GTGAATATTGGATTGATCCCAACCAAGGTTGCTCAGGAGATTCCTTCAAAGTTTACTGTAATTTCACATCTGGTGGTGAGACTTGCATTTATCCAGACAAAAAATCGGAGGGA
Seq C2 exon
GTAAGAATTTCATCATGGCCAAAGGAGAAACCAGGAAGCTGGTTTAGTGAATTTAAGAGAGGAAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021217-'71-74,'71-73,73-74=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.869 A=0.053 C2=0.087
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(13.1=9.5),PF0141013=COLFI=PU(12.7=32.1)
A:
PF0141013=COLFI=FE(17.5=100)
C2:
PF0141013=COLFI=FE(10.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTTACCAATCTTGTCACCCA
R:
GTTTCTCCTTTGGCCATGATGA
Band lengths:
258-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]