RnoEX0022770 @ rn6
Exon Skipping
Gene
ENSRNOG00000023148 | Col11a1
Description
collagen type XI alpha 1 chain [Source:RGD Symbol;Acc:2372]
Coordinates
chr2:217044077-217050993:+
Coord C1 exon
chr2:217044077-217044326
Coord A exon
chr2:217049410-217049522
Coord C2 exon
chr2:217050925-217050993
Length
113 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTTTTTAACTTCTAGGTG
3' ss Score
11.66
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
GGTCCTCCTGGAGAAGTCATACAGCCATTACCTATTTTGTCACCGAAGAAAACAAGAAGACACACTGAAAGCATCCAGGCCGACGCAGGTGATAATATTCTTGACTACTCAGATGGCATGGAGGAAATATTTGGTTCCCTCAATTCTCTGAAACAAGACATTGAACACATGAAGTTTCCCATGGGTACACAGACCAACCCAGCACGAACATGCAAAGACCTGCAGCTCAGCCACCCCGACTTCCCAGATG
Seq A exon
GTGAATATTGGATTGATCCTAACCAAGGCTGCTCAGGTGATTCCTTCAAAGTTTACTGTAATTTCACAGCTGGTGGTGAGACGTGCATCTATCCAGACAAAAAATCTGAGGGA
Seq C2 exon
GTAAGACTTTCATCTTGGCCGAAGGAGAAACCAGGAAGTTGGTACAGTGAATTTAAGAGAGGAAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023148-'72-73,'72-72,73-73
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.845 A=0.053 C2=0.087
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(12.7=9.5),PF0141013=COLFI=PU(12.7=32.1)
A:
PF0141013=COLFI=FE(17.5=100)
C2:
PF0141013=COLFI=FE(10.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACACTGAAAGCATCCAGGC
R:
TTCACTGTACCAACTTCCTGG
Band lengths:
242-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]