GgaEX6015631 @ galGal3
Exon Skipping
Gene
ENSGALG00000001025 | GOLGA1
Description
NA
Coordinates
chr17:10291102-10292179:+
Coord C1 exon
chr17:10291102-10291197
Coord A exon
chr17:10291666-10291761
Coord C2 exon
chr17:10292027-10292179
Length
96 bp
Sequences
Splice sites
3' ss Seq
AATGTACGGTTATGTTTTAGAAT
3' ss Score
7.67
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
AAAGCTTCTCTTGAGCAGAAACTAGATGAAACCAGTCAACAGATATTAACAGACAGAATGCATCATGCTAATGGCATGAACCAGTTAGAAACACAG
Seq A exon
AATAGAGAACTGGAAGAGAAACTACAGATTGCAACAGAAGCATTGAAAATGAGCAAAGAGGCAGCCTCTGAGCAGGATTTGAAGATCCAGAAGTTG
Seq C2 exon
CAAATGGATGTAGAAAATGAAAGAAGTAAACTACAACAGCAGGTTTTAAGTGAGAAACATCAGTATGAACAGAAGATTTCTGAGCTAGAGTCTCAAATTGCTGCTCTTCAAACAGCTTGGGAATTTGATAAAACAGCTGCTCAGCACAAGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001025-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=0.688 C2=0.392
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGACAGAATGCATCATGCT
R:
TCCCAAGCTGTTTGAAGAGCA
Band lengths:
170-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]