HsaEX0027937 @ hg19

Exon Skipping

Gene

ENSG00000136935 | GOLGA1

Description

golgin A1 [Source:HGNC Symbol;Acc:4424]

Coordinates

chr9:127661608-127670751:-

Coord C1 exon

chr9:127670656-127670751

Coord A exon

chr9:127662731-127662826

Coord C2 exon

chr9:127661608-127661757

Length

96 bp

Sequences

Splice sites

3' ss Seq

TGCTTCTGCTTCCCTCTCAGGTG

3' ss Score

10.75

5' ss Seq

CTCGTAAGT

5' ss Score

9.63

Exon sequences

Seq C1 exon

AAAACACTTGCTGAGCAGAATTTGGAGGATACCAGACAACAGCTCTTGGCAGCCAGAAGCAGCCAGGCTAAGGCCATTAACACCCTGGAGACTCGG

Seq A exon

GTGAGAGAACTGGAGCAGACCTTGCAGGCCTCTGAGGAGCAGCTCCAACAGAGCAAGGGCATTGTGGCTGCCCAGGAAACTCAGATACAGGAGCTC

Seq C2 exon

GCTGCCGCCAACCAGGAGAGCAGCCATGTGCAGCAGCAGGCCCTTGCTCTGGAGCAGCAGTTCTTGGAGCGCACCCAGGCGCTAGAAGCCCAGATAGTGGCCCTGGAGAGAACGCGGGCAGCTGACCAGACCACCGCAGAGCAAGGGATG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000136935-'17-19,'17-18,19-19

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.239 A=0.174 C2=0.380

Domain overlap (PFAM):

C1:

PF104734=CENP-F_leu_zip=PD(18.7=71.9),PF078886=CALCOCO1=FE(21.2=100),PF0157614=Myosin_tail_1=FE(22.1=100),PF083176=Spc7=FE(20.7=100),PF045827=Reo_sigmaC=FE(20.8=100),PF0192313=Cob_adeno_trans=FE(26.5=100)

A:

NO

C2:

PF078886=CALCOCO1=PD(4.8=50.0),PF0157614=Myosin_tail_1=PD(1.4=14.3),PF083176=Spc7=PD(7.3=78.6),PF045827=Reo_sigmaC=PD(6.7=71.4),PF0192313=Cob_adeno_trans=PD(6.0=50.0)

Main Inclusion Isoform:

ENSP00000362656