DreEX0035453 @ danRer10
Exon Skipping
Gene
ENSDARG00000008979 | golga1
Description
golgin A1 [Source:ZFIN;Acc:ZDB-GENE-040426-1237]
Coordinates
chr8:41474684-41477588:-
Coord C1 exon
chr8:41477493-41477588
Coord A exon
chr8:41476523-41476618
Coord C2 exon
chr8:41474684-41474836
Length
96 bp
Sequences
Splice sites
3' ss Seq
AATGATGTGTGTTCTGTAAGATA
3' ss Score
3.6
5' ss Seq
CTGGTACAT
5' ss Score
4.22
Exon sequences
Seq C1 exon
GTCTCTCGGCAGAATGCAAGCATAACAGATCTGCAGACTCTGGTCAAACACAAAGACGACTCGTCCAAAGCTTACAGAGAAAGAACAGATGCACAG
Seq A exon
ATATCAGATCTGGAGCAGAGACTGGCGGACTGCGCTGAGAAGATGAAGAGTCTACAACAGCAACTCAAAGACAGCCAAATGCACACAGACAAACTG
Seq C2 exon
CAGGTGGAGTGGTCAGAGGAGCGAGAGCGGCTACAGCAGCAGGTGTCCACACAAAGACAGAGAGGCCTGGAGAAAACAGCCAGACTGGAGGAAGAGCTGCTTGCACTACAGAGAGACAGAGAAACGGAGGCCAACAAATATCAGGACAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008979-'17-19,'17-18,18-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=0.688 C2=0.882
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATCTGCAGACTCTGGTCA
R:
AAGCAGCTCTTCCTCCAGTCT
Band lengths:
174-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]