RnoEX0039154 @ rn6
Exon Skipping
Gene
ENSRNOG00000014493 | Golga1
Description
golgin A1 [Source:RGD Symbol;Acc:1311305]
Coordinates
chr3:23326115-23329228:-
Coord C1 exon
chr3:23329133-23329228
Coord A exon
chr3:23327420-23327515
Coord C2 exon
chr3:23326115-23326264
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATGCTTCTGTTTCTCCTCAGGTG
3' ss Score
12.21
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
AAAACTGTGGCTGAACAGAAACTGCAGGATACTAGGCAACAGCTCTTGGCTGCCAAGAACAGCCACACCAAGGCAGTTGACCTCCTGGAGACTCGG
Seq A exon
GTGAAGGACCTAGAGCAGAGCCTACAGGCTGCTGAAGAGCAGCTAAGCCAGAGTAGAGATGTTGTGGCTGGCCAGGAAGCGCAGATCCAGAAGCTT
Seq C2 exon
ATCACTACAAACCAAGAGAACAACCTTTCCCAACAGCAGGTTCTTGCCCTGGAGCAACATTGCAGGGAGCGCATCCATGCACTGGAGGCCCAAATTGAAGCTCTGGAACAAACACGGGCGGCTGACCAGATAGCCTCTGAGCAGGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014493-'17-19,'17-18,18-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=0.125 C2=0.340
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTAGGCAACAGCTCTTGGC
R:
AGCTTCAATTTGGGCCTCCAG
Band lengths:
169-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]