DreEX0035452 @ danRer10
Exon Skipping
Gene
ENSDARG00000008979 | golga1
Description
golgin A1 [Source:ZFIN;Acc:ZDB-GENE-040426-1237]
Coordinates
chr8:41476523-41478428:-
Coord C1 exon
chr8:41478333-41478428
Coord A exon
chr8:41477493-41477588
Coord C2 exon
chr8:41476523-41476618
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTTGTTTGATTTGTTTGCAGGTC
3' ss Score
8.33
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AAGTCTTCCTTGGAGCAAAGGTTAGAGGAGGCCAGAGGAGAGTTACTGCAGGAGAAAACCAGTCACACTACAGCAGTCAGTTCACTGGAGGCACAG
Seq A exon
GTCTCTCGGCAGAATGCAAGCATAACAGATCTGCAGACTCTGGTCAAACACAAAGACGACTCGTCCAAAGCTTACAGAGAAAGAACAGATGCACAG
Seq C2 exon
ATATCAGATCTGGAGCAGAGACTGGCGGACTGCGCTGAGAAGATGAAGAGTCTACAACAGCAACTCAAAGACAGCCAAATGCACACAGACAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008979-'16-18,'16-17,17-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.938 A=0.875 C2=0.688
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTAGAGGAGGCCAGAGGAG
R:
TGTCTGTGTGCATTTGGCTGT
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]